Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MECP2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
MeCP2 ChIP WT
cell type
in vitro differentiated interneurons (INs)
genotype/variation
WT
stimulation
None
treatment
None
antibody
MeCP2 (ab195393, Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq kit for transcription factors (C01010170, Diagenode) ThruPLEX DNA-seq kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
15197045
Reads aligned (%)
175.9
Duplicates removed (%)
8.0
Number of peaks
235 (qval < 1E-05)

hg38

Number of total reads
15197045
Reads aligned (%)
177.0
Duplicates removed (%)
7.9
Number of peaks
324 (qval < 1E-05)

Base call quality data from DBCLS SRA