Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
BRD4 ChIP R133C
cell type
in vitro differentiated interneurons (INs)
genotype/variation
MeCP2 R133C mutant
stimulation
None
treatment
JQ1
antibody
BRD4 (A301-985A50,Bethyl lab.)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq kit for transcription factors (C01010170, Diagenode) ThruPLEX DNA-seq kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
35612773
Reads aligned (%)
90.8
Duplicates removed (%)
7.9
Number of peaks
1434 (qval < 1E-05)

hg38

Number of total reads
35612773
Reads aligned (%)
92.6
Duplicates removed (%)
6.6
Number of peaks
1994 (qval < 1E-05)

Base call quality data from DBCLS SRA