SRX4417540
GSM3302087: BRD4 ChIP R133C KCl- JQ1+; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
BRD4 ChIP R133C
cell type
in vitro differentiated interneurons (INs)
genotype/variation
MeCP2 R133C mutant
stimulation
None
treatment
JQ1
antibody
BRD4 (A301-985A50,Bethyl lab.)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq kit for transcription factors (C01010170, Diagenode) ThruPLEX DNA-seq kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35612773
Reads aligned (%)
99.2
Duplicates removed (%)
6.6
Number of peaks
1994 (qval < 1E-05)

hg19

Number of total reads
35612773
Reads aligned (%)
98.5
Duplicates removed (%)
7.9
Number of peaks
1434 (qval < 1E-05)

Base call quality data from DBCLS SRA