SRX4417529
GSM3302076: CTCF ChIP WT KCl+ JQ1+; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
CTCF ChIP WT
cell type
in vitro differentiated interneurons (INs)
genotype/variation
WT
stimulation
KCl
treatment
JQ1
antibody
CTCF (K09622002, Diagenode)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iDeal ChIP-seq kit for transcription factors (C01010170, Diagenode) ThruPLEX DNA-seq kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16265402
Reads aligned (%)
99.3
Duplicates removed (%)
15.7
Number of peaks
46560 (qval < 1E-05)

hg19

Number of total reads
16265402
Reads aligned (%)
99.1
Duplicates removed (%)
16.0
Number of peaks
46454 (qval < 1E-05)

Base call quality data from DBCLS SRA