Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

ACHN

Primary Tissue

Kidney

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

Human renal cell carcinoma cultures

patient age

22

gender

male

cell line

ATCC:CRL-1611, cell line

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

PEG precipitation and size fractionation of DNA Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

137527843

Reads aligned (%)

89.2

Duplicates removed (%)

35.0

Number of peaks

101400 (qval < 1E-05)

hg19

Number of total reads

137527843

Reads aligned (%)

88.6

Duplicates removed (%)

35.7

Number of peaks

99936 (qval < 1E-05)