SRX4404888
GSM3291016: HIM15 Human renal cell carcinoma DS37973[Dnase-seq]; Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Renal cell carcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
Human renal cell carcinoma cultures
patient age
62
gender
male

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
PEG precipitation and size fractionation of DNA Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66519556
Reads aligned (%)
78.5
Duplicates removed (%)
39.7
Number of peaks
103176 (qval < 1E-05)

hg19

Number of total reads
66519556
Reads aligned (%)
78.0
Duplicates removed (%)
40.1
Number of peaks
102242 (qval < 1E-05)

Base call quality data from DBCLS SRA