SRX4403307
GSM3290450: NPC WT input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
tissue
Neural progenitor cells
chip antibody
None
cell type
WT R1 ESC-derived NPCs
culture conditions
NPC medium

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared for Illumina sequencing using 5 ng of ChIP material with a Kapa Hyper Prep Kit (Kapa Biosystems), according to the manufacturer's instructions

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
47647908
Reads aligned (%)
93.7
Duplicates removed (%)
41.8
Number of peaks
509 (qval < 1E-05)

mm9

Number of total reads
47647908
Reads aligned (%)
93.5
Duplicates removed (%)
41.8
Number of peaks
567 (qval < 1E-05)

Base call quality data from DBCLS SRA