Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PSIP1

Cell type

Cell type Class
Muscle
Cell type
Myotube
NA
NA

Attributes by original data submitter

Sample

source_name
Myotube
genotype
Wild type
tissue
Myotube
chip antibody
LEDGF, Proteintech, #25504-1-AP

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
54749333
Reads aligned (%)
80.0
Duplicates removed (%)
10.5
Number of peaks
1009 (qval < 1E-05)

hg38

Number of total reads
54749333
Reads aligned (%)
81.5
Duplicates removed (%)
9.3
Number of peaks
820 (qval < 1E-05)

Base call quality data from DBCLS SRA