Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NOTCH1

Cell type

Cell type Class
Breast
Cell type
HCC1599
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
HCC1599 cell line
cell line
HCC1599
cell type
Triple-negative breast cancer cell line
chip antibody
NICD1
drug treatment
GSI-mock-washout

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
21802994
Reads aligned (%)
91.1
Duplicates removed (%)
4.8
Number of peaks
1683 (qval < 1E-05)

hg38

Number of total reads
21802994
Reads aligned (%)
93.1
Duplicates removed (%)
3.4
Number of peaks
1696 (qval < 1E-05)

Base call quality data from DBCLS SRA