Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
Input DNA from normal S2 cells
cell line
S2
cell origin
Embryonic cell line
passages
15-20
genotype/variation
wild type
chip antibody
None

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated cells and DNA complexes were isolated with antibody. ChIP-DNA libraries were produced using the NEBNext Ultra II DNA Library Prep Kit (NEB E7645L) and NEBnext Multiplex Oligos for Illumina Dual Index Primers (NEB E7600S), using provided protocols with 10ng of fragmented ChIP DNA

Platform Information


instrument_model
Illumina HiSeq 4000

External Database Query

Logs in read processing pipeline


Number of total reads
10690945
Reads aligned (%)
97.5
Duplicates removed (%)
26.3
Number of peaks
1725 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA