SRX4338416
GSM3243670: HOXA9; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXA9

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
xenograft sample from patient XE89 - HOXA9 ChIP
tissue
xenograft
chip antibody
HOXA9 Sigma Atlas Antibodies Cat#HPA061982 Lot#86503
sample type
xenograft sample from patient XE89

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28965808
Reads aligned (%)
45.0
Duplicates removed (%)
18.4
Number of peaks
536 (qval < 1E-05)

hg19

Number of total reads
28965808
Reads aligned (%)
44.3
Duplicates removed (%)
18.7
Number of peaks
241 (qval < 1E-05)

Base call quality data from DBCLS SRA