SRX4330704
GSM3241221: Control ChIP1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4 T cells
strain
C57Bl/6Ncr
genotype
BirA
immunoprecipitation
Streptavidin

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was treated with proteinase K and RNase (both at 0.2mg/ml) before purification using the QIAquick PCR purification kit (Qiagen) Accel-NGS 2S DNA reagent (Swift) Libraries were sequenced (75bp single-ended reads) on a NextSeq sequencer (Illumina)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43984096
Reads aligned (%)
91.5
Duplicates removed (%)
48.3
Number of peaks
318 (qval < 1E-05)

mm9

Number of total reads
43984096
Reads aligned (%)
91.2
Duplicates removed (%)
48.4
Number of peaks
320 (qval < 1E-05)

Base call quality data from DBCLS SRA