SRX4317519
GSM3230071: N250 INPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast organoids
NA
NA

Attributes by original data submitter

Sample

source_name
N250
cell type
breast organoids
genotype/variation
normal (control)
antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNeasy Mini Kit for RNA extraction, phenol-chloroform extraction for ChIP DNA Kapa mRNA Hyper Pepe Kit, Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63147335
Reads aligned (%)
98.5
Duplicates removed (%)
6.5
Number of peaks
2250 (qval < 1E-05)

hg19

Number of total reads
63147335
Reads aligned (%)
97.4
Duplicates removed (%)
8.0
Number of peaks
1836 (qval < 1E-05)

Base call quality data from DBCLS SRA