Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
LCL
cell type
LCL
ID
Donor 9
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was isolated from B cells and LCLs with Trizol. Libraries were prepared using Kapa Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
25691156
Reads aligned (%)
88.1
Duplicates removed (%)
1.0
Number of peaks
1033 (qval < 1E-05)

hg19

Number of total reads
25691156
Reads aligned (%)
87.1
Duplicates removed (%)
1.2
Number of peaks
542 (qval < 1E-05)

Base call quality data from DBCLS SRA