SRX4289094
GSM3212932: D6 B cell Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
B-cell (CD19+)
Tissue
Blood
Lineage
primaryCells
Description
B Cell , CD19+

Attributes by original data submitter

Sample

source_name
CD19 B cells
cell type
CD19 B cells
ID
Donor 6
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was isolated from B cells and LCLs with Trizol. Libraries were prepared using Kapa Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22175339
Reads aligned (%)
81.5
Duplicates removed (%)
1.2
Number of peaks
808 (qval < 1E-05)

hg19

Number of total reads
22175339
Reads aligned (%)
80.4
Duplicates removed (%)
1.3
Number of peaks
507 (qval < 1E-05)

Base call quality data from DBCLS SRA