Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
CTCF HiChIP-seq
cell line
lymphoblastoid cell lines (LCLs)
disease
Systemic lupus erythematosus
race
European-American
gender
female
chip antibody
CTCF (Cell Signaling #3418, clone D31H2)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
92390968
Reads aligned (%)
139.1
Duplicates removed (%)
5.1
Number of peaks
15816 (qval < 1E-05)

hg38

Number of total reads
92390968
Reads aligned (%)
140.2
Duplicates removed (%)
5.0
Number of peaks
15447 (qval < 1E-05)

Base call quality data from DBCLS SRA