Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D_ESR1WT_noE2_HA_ChIPseq
cell line
T47D
cell subtype
Stable ESR1-WT expressing model
condition
Hormone-deprived media
chip antibody
HA (Santa Cruz, sc-7392)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
24787815
Reads aligned (%)
89.7
Duplicates removed (%)
1.4
Number of peaks
936 (qval < 1E-05)

hg19

Number of total reads
24787815
Reads aligned (%)
88.8
Duplicates removed (%)
2.7
Number of peaks
1072 (qval < 1E-05)

Base call quality data from DBCLS SRA