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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: rhi
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX4279688
input [Rhino ChIP] DNA from thoc5[e00906]/thoc5[1]
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
rhi
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
strain
thoc5[e00906]/thoc5[1]
age
2-4 days
sex
female
tissue
ovary
sample_type
input DNA
target
Rhino
Sequenced DNA Library
library_name
input [Rhino ChIP] DNA from thoc5[e00906]/thoc5[1]_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
20592334
Reads aligned (%)
107.1
Duplicates removed (%)
28.1
Number of peaks
1428 (qval < 1E-05)
dm6
Number of total reads
20592334
Reads aligned (%)
100.5
Duplicates removed (%)
29.7
Number of peaks
991 (qval < 1E-05)
Base call quality data from
DBCLS SRA