Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: rhi
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX4279665
input [Rhino ChIP] DNA from thoc7[d05792]/Df(3L)BSC128
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
rhi
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
strain
thoc7[d05792]/Df(3L)BSC128
age
2-4 days
sex
female
tissue
ovary
sample_type
input DNA
target
Rhino
Sequenced DNA Library
library_name
input [Rhino ChIP] DNA from thoc7[d05792]/Df(3L)BSC128_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
22980012
Reads aligned (%)
122.9
Duplicates removed (%)
18.8
Number of peaks
1575 (qval < 1E-05)
dm6
Number of total reads
22980012
Reads aligned (%)
117.2
Duplicates removed (%)
19.7
Number of peaks
1215 (qval < 1E-05)
Base call quality data from
DBCLS SRA