Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Glomerular visceral epithelial cells
NA
NA

Attributes by original data submitter

Sample

sample_type
primary cell
cell type
glomerular visceral epithelial cell
sex
not collected
dev_stage
child
age
3 year
donor ID
ENCDO879VOF
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
not provided

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
154341400
Reads aligned (%)
86.7
Duplicates removed (%)
12.6
Number of peaks
88707 (qval < 1E-05)

hg19

Number of total reads
154341400
Reads aligned (%)
86.1
Duplicates removed (%)
13.2
Number of peaks
88030 (qval < 1E-05)

Base call quality data from DBCLS SRA