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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Kidney tubule cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4278338
GSM3192465: DNase-seq from kidney tubule cell (ENCLB626YLU); Homo sapiens; DNase-Hypersensitivity
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Kidney
Cell type
Kidney tubule cells
NA
NA
Attributes by original data submitter
Sample
sample_type
primary cell
cell type
kidney tubule cell
sex
male
dev_stage
adult
age
62 year
donor ID
ENCDO335XPZ
lab
John Stamatoyannopoulos, UW
Sequenced DNA Library
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
not provided
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
37013090
Reads aligned (%)
84.5
Duplicates removed (%)
8.0
Number of peaks
62623 (qval < 1E-05)
hg19
Number of total reads
37013090
Reads aligned (%)
84.0
Duplicates removed (%)
8.3
Number of peaks
61954 (qval < 1E-05)
Base call quality data from
DBCLS SRA