SRX4278335
GSM3192462: DNase-seq from kidney tubule cell (ENCLB888MCL); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Kidney tubule cells
NA
NA

Attributes by original data submitter

Sample

sample_type
primary cell
cell type
kidney tubule cell
sex
female
dev_stage
adult
age
80 year
donor ID
ENCDO421EJG
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
212667937
Reads aligned (%)
68.9
Duplicates removed (%)
22.3
Number of peaks
91875 (qval < 1E-05)

hg19

Number of total reads
212667937
Reads aligned (%)
68.3
Duplicates removed (%)
23.1
Number of peaks
90746 (qval < 1E-05)

Base call quality data from DBCLS SRA