Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Kidney glomerular epithelial cells
NA
NA

Attributes by original data submitter

Sample

sample_type
primary cell
cell type
kidney glomerular epithelial cell
sex
male
dev_stage
adult
age
62 year
donor ID
ENCDO730EZR
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
310648092
Reads aligned (%)
68.2
Duplicates removed (%)
38.6
Number of peaks
132669 (qval < 1E-05)

hg19

Number of total reads
310648092
Reads aligned (%)
67.8
Duplicates removed (%)
39.3
Number of peaks
131419 (qval < 1E-05)

Base call quality data from DBCLS SRA