SRX4275238
K31R-th17 ChIP-seq rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
age
6-8weeks
sex
pooled male and female
tissue
T cell
genotype
K31R

Sequenced DNA Library

library_name
K31R-th17 ChIP-seq rep2.zip
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52427759
Reads aligned (%)
98.0
Duplicates removed (%)
19.3
Number of peaks
1603 (qval < 1E-05)

mm9

Number of total reads
52427759
Reads aligned (%)
97.8
Duplicates removed (%)
19.3
Number of peaks
1430 (qval < 1E-05)

Base call quality data from DBCLS SRA