Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXC11

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

source_name
Ly2 HoxC11_Untreated
cell line
LY2
cell type
breast cancer
treatment
Untreated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were generated from 10 ng of ChIP output DNA by adaptor ligation, gel purification, and cycles of PCR as described by Illumina.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
9035285
Reads aligned (%)
66.0
Duplicates removed (%)
18.3
Number of peaks
199 (qval < 1E-05)

hg38

Number of total reads
9035285
Reads aligned (%)
67.4
Duplicates removed (%)
17.6
Number of peaks
156 (qval < 1E-05)

Base call quality data from DBCLS SRA