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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HOXC11
wikigenes
PDBj
CellType: LY2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX425996
GSM1306053: Ly2 HoxC11 Untreated; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HOXC11
Cell type
Cell type Class
Breast
Cell type
LY2
NA
NA
Attributes by original data submitter
Sample
source_name
Ly2 HoxC11_Untreated
cell line
LY2
cell type
breast cancer
treatment
Untreated
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were generated from 10 ng of ChIP output DNA by adaptor ligation, gel purification, and cycles of PCR as described by Illumina.
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
9035285
Reads aligned (%)
81.8
Duplicates removed (%)
17.6
Number of peaks
156 (qval < 1E-05)
hg19
Number of total reads
9035285
Reads aligned (%)
80.8
Duplicates removed (%)
18.3
Number of peaks
199 (qval < 1E-05)
Base call quality data from
DBCLS SRA