Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rxra

Cell type

Cell type Class
Bone
Cell type
MC3T3-E1
NA
NA

Attributes by original data submitter

Sample

source_name
MC3T3-E1 cells differentiated for 15 days
passage number
5 - 12
antibody
RXR (Santa Cruz, ΔN-197, sc-774, lot# G2310)
cell line
MC3T3-E1 differentiated for 15 days
treatment
100nM 1,25(OH)2D3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
212094224
Reads aligned (%)
93.2
Duplicates removed (%)
62.0
Number of peaks
49611 (qval < 1E-05)

mm9

Number of total reads
212094224
Reads aligned (%)
93.0
Duplicates removed (%)
62.0
Number of peaks
49656 (qval < 1E-05)

Base call quality data from DBCLS SRA