Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Digestive tract
Cell type
SW 480
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

source_name
SW480 Cells
cell line
SW480
cell type
Colon Cancer Cells
genotype/variation
Human Colon Cancer Cell Line, stable control (LacZ) knockdown
treatment
TNF-a
chip antibody
anti-p53 (FL393, sc6243)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
53107470
Reads aligned (%)
82.9
Duplicates removed (%)
12.1
Number of peaks
63152 (qval < 1E-05)

hg38

Number of total reads
53107470
Reads aligned (%)
83.7
Duplicates removed (%)
11.7
Number of peaks
63317 (qval < 1E-05)

Base call quality data from DBCLS SRA