Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PARP1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Breast cancer cell line
chip antibody
PARP1
time
30 min
cell line
T47D-MTVL
treatment
progestin

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
88376396
Reads aligned (%)
35.8
Duplicates removed (%)
60.8
Number of peaks
1744 (qval < 1E-05)

hg38

Number of total reads
88376396
Reads aligned (%)
38.0
Duplicates removed (%)
58.7
Number of peaks
2026 (qval < 1E-05)

Base call quality data from DBCLS SRA