Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX5

Cell type

Cell type Class
Blood
Cell type
NALM-6
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NALM6 leukemia cell line
antibody
PAX5, Abcam : ab15164
cell line
NALM6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using Qiagen kit Libraries were constructed using standard Illumina procedures

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
58305991
Reads aligned (%)
88.1
Duplicates removed (%)
10.0
Number of peaks
31851 (qval < 1E-05)

hg38

Number of total reads
58305991
Reads aligned (%)
89.7
Duplicates removed (%)
8.9
Number of peaks
32110 (qval < 1E-05)

Base call quality data from DBCLS SRA