Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
22Rv1
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
cell line
cell line
22RV-1
tissue
prostate cancer
genotype/variation
n/a
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The chromatin was prepared and followed by ChIP-Seq analysis by Active Motif, Inc. using the antibody against BRG1 (abcam, ab110641). Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
39731985
Reads aligned (%)
95.8
Duplicates removed (%)
7.8
Number of peaks
1506 (qval < 1E-05)

hg19

Number of total reads
39731985
Reads aligned (%)
95.0
Duplicates removed (%)
9.5
Number of peaks
1306 (qval < 1E-05)

Base call quality data from DBCLS SRA