Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Prostate
Cell type
22Rv1
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
cell line
cell line
22RV-1
tissue
prostate cancer
genotype/variation
PTEN knockdown
antibody
BRG1 (abcam, ab110641)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The chromatin was prepared and followed by ChIP-Seq analysis by Active Motif, Inc. using the antibody against BRG1 (abcam, ab110641). Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
37721948
Reads aligned (%)
49.6
Duplicates removed (%)
43.5
Number of peaks
13115 (qval < 1E-05)

hg38

Number of total reads
37721948
Reads aligned (%)
50.9
Duplicates removed (%)
42.3
Number of peaks
13159 (qval < 1E-05)

Base call quality data from DBCLS SRA