Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic organoids
NA
NA

Attributes by original data submitter

Sample

source_name
hN35_human_organoid
cell type
hN35 human organoid
genotype/variation
wildtype
chip antibodies
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
24105773
Reads aligned (%)
98.9
Duplicates removed (%)
5.8
Number of peaks
650 (qval < 1E-05)

hg19

Number of total reads
24105773
Reads aligned (%)
98.2
Duplicates removed (%)
6.8
Number of peaks
823 (qval < 1E-05)

Base call quality data from DBCLS SRA