Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

source_name
Kidney
strain/background
C57BL/6
genotype/variation
wild-type
Stage
Lactation day 10
tissue
Kidney
chip antibody
RNA polymerase II (Abcam, ab5408)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
12042557
Reads aligned (%)
98.6
Duplicates removed (%)
6.3
Number of peaks
810 (qval < 1E-05)

mm9

Number of total reads
12042557
Reads aligned (%)
98.4
Duplicates removed (%)
6.4
Number of peaks
831 (qval < 1E-05)

Base call quality data from DBCLS SRA