Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

source_name
heart tissue
phenotype
wild-type
surgical procedure
a pool of both sham and transverse aortic constriction
days post-surgery
7
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Heart were surgically removed and snap frozen and shipped to Active Motif for ChIP-Seq Library was constructed by Active Motif (https://www.activemotif.com/)

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
28325553
Reads aligned (%)
98.3
Duplicates removed (%)
8.8
Number of peaks
433 (qval < 1E-05)

mm9

Number of total reads
28325553
Reads aligned (%)
98.2
Duplicates removed (%)
8.8
Number of peaks
386 (qval < 1E-05)

Base call quality data from DBCLS SRA