Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary prostate cancer
chip antibody
AR (Santa Cruz; sc-816)
patient id
P4_AR_FA
case/control
FA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
24525338
Reads aligned (%)
98.4
Duplicates removed (%)
1.5
Number of peaks
359 (qval < 1E-05)

hg38

Number of total reads
24525338
Reads aligned (%)
99.0
Duplicates removed (%)
0.9
Number of peaks
287 (qval < 1E-05)

Base call quality data from DBCLS SRA