Antigen

Antigen Class

TFs and others

Antigen

AR

Cell type

Cell type Class

Prostate

Cell type

LNCAP

Primary Tissue

Prostate

Tissue Diagnosis

Carcinoma

Sample

source_name

cell line LNCaP

androgen_treatment

Y

hypoxia_treatment

N

chip antibody

AR N20

target protein

AR

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Genomic DNA was isolated using phenol:chloroform:isopropanol (25:24:1, Invitrogen), back-extracted with 200ul of TE, precipitated with isopropanol, washed with 75% ethanol, air-dried and resuspended in 60ul 10mM Tris-HCl pH 8. TruSeq ChIP kit from Illumina

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

72995300

Reads aligned (%)

98.6

Duplicates removed (%)

20.6

Number of peaks

80453 (qval < 1E-05)

hg19

Number of total reads

72995300

Reads aligned (%)

98.0

Duplicates removed (%)

21.5

Number of peaks

80127 (qval < 1E-05)