Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATAD2B

Cell type

Cell type Class
Breast
Cell type
HCC3153
Primary Tissue
Breast
Tissue Diagnosis
Unknown

Attributes by original data submitter

Sample

source_name
HCC3153_sh2_dox+_GATAD2B_2
cell line
HCC3153
hairpin
shTRPS1-2
treatment
Dox
chip antibody
GATAD2B
chip antibody info
Bethyl, cat# A301-283A

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
54064691
Reads aligned (%)
44.9
Duplicates removed (%)
53.5
Number of peaks
968 (qval < 1E-05)

hg38

Number of total reads
54064691
Reads aligned (%)
46.5
Duplicates removed (%)
52.1
Number of peaks
1034 (qval < 1E-05)

Base call quality data from DBCLS SRA