Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
SMAD3
Cell type Class
Prostate
Cell type
PC-3

Cell type information


Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by Original Data Submitter


source_name
PC3 cells
protocol
Hypoxia
cell line
PC3 cells
tumor type
prostate cancer
antibody
SMAD3

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. ChIP-enriched DNA was used for library creation with the Rubicon ThruPLEX-FD kit and sequenced (75 bp single-end reads).

Platform Information


instrument_model
NextSeq 500

External Database Query

Logs in read processing pipeline


Number of total reads
46174272
Reads aligned (%)
96.3
Duplicates removed (%)
75.4
Number of peaks
19448 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA