SRX4085367
GSM3142668: wt L1 DNase-seq rep2 10U ml; Caenorhabditis elegans; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
L1 larvae
strain
wild-type N2
age
L1 larvae
protocol
2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
30806701
Reads aligned (%)
81.7
Duplicates removed (%)
6.4
Number of peaks
2101 (qval < 1E-05)

ce10

Number of total reads
30806701
Reads aligned (%)
81.7
Duplicates removed (%)
6.4
Number of peaks
2060 (qval < 1E-05)

Base call quality data from DBCLS SRA