Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXB13

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
Localized tumor HOXB13
tissue
localized prostate tumor tissue
chip antibody
HOXB13
chip antibody vendor
Santa Cruz Biotechnology
chromosome
AR enhancer location

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
228661
Reads aligned (%)
98.7
Duplicates removed (%)
0.0
Number of peaks
232 (qval < 1E-05)

hg38

Number of total reads
228661
Reads aligned (%)
98.8
Duplicates removed (%)
0.0
Number of peaks
228 (qval < 1E-05)

Base call quality data from DBCLS SRA