Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX9

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived retinal cells
NA
NA

Attributes by original data submitter

Sample

source_name
hES-RPE
cell type
ES-derived RPE cells
chip antibody
rabbit anti-Sox9 (Millipore, AB5535)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated chromatin from hES-RPE cells was immunoprecipitated with rabbit anti SOX9 ( Millipore, AB5535 ). Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
16793645
Reads aligned (%)
93.5
Duplicates removed (%)
3.8
Number of peaks
849 (qval < 1E-05)

hg38

Number of total reads
16793645
Reads aligned (%)
95.7
Duplicates removed (%)
2.7
Number of peaks
669 (qval < 1E-05)

Base call quality data from DBCLS SRA