SRX4065341
GSM3139251: input.s1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived retinal cells
NA
NA

Attributes by original data submitter

Sample

source_name
hES-RPE
cell type
ES-derived RPE cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated chromatin from hES-RPE cells was immunoprecipitated with rabbit anti SOX9 ( Millipore, AB5535 ). Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7744541
Reads aligned (%)
98.8
Duplicates removed (%)
1.7
Number of peaks
323 (qval < 1E-05)

hg19

Number of total reads
7744541
Reads aligned (%)
97.7
Duplicates removed (%)
2.2
Number of peaks
468 (qval < 1E-05)

Base call quality data from DBCLS SRA