Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
motor neurons
cell type
ES-derived motor neurons
passages
13-15
strain
C57BL/6
chip antibody
n/a

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Dissociated motor neurons were clarified from sonicated nuclei and histone-DNA complexes were isolated with H3K27me3 antibody Libraries were prepared according to Illumina's instructions accompanying the KAPA TruSeq DNA library prep kit (KK8201). Briefly, DNA was end-repaired by using End Repair Mix (ERP). After adapter ligation DNA was PCR amplified with Illumina primers for 12 cycles and library fragments of ~300 bp (insert plus adaptor and PCR primer sequences). The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
36786245
Reads aligned (%)
96.2
Duplicates removed (%)
35.0
Number of peaks
438 (qval < 1E-05)

mm9

Number of total reads
36786245
Reads aligned (%)
95.7
Duplicates removed (%)
34.9
Number of peaks
483 (qval < 1E-05)

Base call quality data from DBCLS SRA