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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
SRX4053366
Drosophila melanogaster yw egg control ChIP seq Input 2 2 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
strain
yw
isolate
not applicable
breed
not applicable
cultivar
not applicable
ecotype
not applicable
age
3:45-4:45 h
dev_stage
embryo
sex
pooled male and female
tissue
egg
genotype
wt
sample_type
Input
treatment
control
Replicate no.
2
Run no.
2
file no.
1
Sequenced DNA Library
library_name
Drosophila melanogaster_yw_egg_control_ChIP seq_Input_2_2_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
28729221
Reads aligned (%)
79.6
Duplicates removed (%)
49.9
Number of peaks
3868 (qval < 1E-05)
dm3
Number of total reads
28729221
Reads aligned (%)
83.2
Duplicates removed (%)
48.6
Number of peaks
3313 (qval < 1E-05)
Base call quality data from
DBCLS SRA