Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
MOLM-13
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Leukemic cell line MOLM-13 cells
cell line
MOLM-13
shRNA
sh-RNA Control
chip antibody
CHIP Input control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
QIAGEN RNeasy Plus ThruPLEX DNA-seq Kit (Rubicon Genomics) Samples were barcoded and pooled in equimolar amounts and sent out for next-generation sequencing

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
27531162
Reads aligned (%)
99.1
Duplicates removed (%)
1.8
Number of peaks
868 (qval < 1E-05)

hg19

Number of total reads
27531162
Reads aligned (%)
98.3
Duplicates removed (%)
3.2
Number of peaks
1017 (qval < 1E-05)

Base call quality data from DBCLS SRA