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For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: aop
wikigenes
PDBj
CellType: 7h embryos
ATCC
MeSH
RIKEN BRC
SRX4047178
GSM3132642: Yan ChIP pntmutant; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
aop
Cell type
Cell type Class
Embryo
Cell type
7h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
Stage 11 embryos
chip antibody
Guinea pig anti-Yan antibody (1:500), Webber et al. (2013) Genetics, 193:633-649
genotype
pnt -/- (pnt Delta88)
Stage
stage 11 embryo
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Hand-selected embryos were fixed with 1.8% formaldehyde. Lysates were clarified from sonicated nuclei andTF-DNA complexes isolated with an antibody. Libraries were prepared for sequencing using standard Illumina protocols.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
96672516
Reads aligned (%)
29.9
Duplicates removed (%)
64.2
Number of peaks
0 (qval < 1E-05)
dm6
Number of total reads
96672516
Reads aligned (%)
25.0
Duplicates removed (%)
69.7
Number of peaks
11573 (qval < 1E-05)
Base call quality data from
DBCLS SRA