Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CXXC1

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
EBV-transformed B lymphoblast
cell type
EBV-transformed B lymphoblast
chip antibody
CFP1 (ab56035), from Abcam
number of sonications
1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
as described by Pope SH et al, Eur J Haematol 64:292-303, 2000 library construction was provided by Oxford Genomics Centre, or by Edinburgh Genomics

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
41374998
Reads aligned (%)
61.2
Duplicates removed (%)
14.7
Number of peaks
2294 (qval < 1E-05)

hg38

Number of total reads
41374998
Reads aligned (%)
63.0
Duplicates removed (%)
13.2
Number of peaks
1946 (qval < 1E-05)

Base call quality data from DBCLS SRA