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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CXXC1
wikigenes
PDBj
CellType: Lymphoblastoid cell line
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4046315
GSM3132551: bebv CFP1 AbcamAb; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CXXC1
Cell type
Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines
Attributes by original data submitter
Sample
source_name
EBV-transformed B lymphoblast
cell type
EBV-transformed B lymphoblast
chip antibody
CFP1 (ab56035), from Abcam
number of sonications
1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
as described by Pope SH et al, Eur J Haematol 64:292-303, 2000 library construction was provided by Oxford Genomics Centre, or by Edinburgh Genomics
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
41374998
Reads aligned (%)
61.2
Duplicates removed (%)
14.7
Number of peaks
2294 (qval < 1E-05)
hg38
Number of total reads
41374998
Reads aligned (%)
63.0
Duplicates removed (%)
13.2
Number of peaks
1946 (qval < 1E-05)
Base call quality data from
DBCLS SRA