Antigen

Antigen Class

TFs and others

Antigen

CXXC1

Cell type

Cell type Class

Blood

Cell type

Lymphoblastoid cell line

Tissue

blood

Lineage

mesoderm

Description

parental cell type to lymphoblastoid cell lines

Sample

source_name

EBV-transformed B lymphoblast

cell type

EBV-transformed B lymphoblast

chip antibody

CFP1 (ab56035), from Abcam

number of sonications

1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

as described by Pope SH et al, Eur J Haematol 64:292-303, 2000 library construction was provided by Oxford Genomics Centre, or by Edinburgh Genomics

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg19

Number of total reads

41374998

Reads aligned (%)

61.2

Duplicates removed (%)

14.7

Number of peaks

2294 (qval < 1E-05)

hg38

Number of total reads

41374998

Reads aligned (%)

63.0

Duplicates removed (%)

13.2

Number of peaks

1946 (qval < 1E-05)