Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

source_name
heart, mdx, cardiomyocyte IKKb-/-
age
7 months
antibody
None
genotype/variation
IKKb-/-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated soluble chromatin was immunoprecipitated with 15 mg of H3K27ac antibody and pulled down by protein G sepharose beads equillibriated with yeast tRNA and BSA. Purified DNA (10 ng) was end-repaired and A-nucleotide overhangs were added by incubation with the Taq Klenow fragment lacking exonuclease activity. After the attachment of anchor sequences, fragments were PCR-amplified using Illumina-supplied primers. The purified DNA library products were evaluated using Bioanalyzer (Agilent).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
25446715
Reads aligned (%)
95.0
Duplicates removed (%)
5.9
Number of peaks
265 (qval < 1E-05)

mm9

Number of total reads
25446715
Reads aligned (%)
94.8
Duplicates removed (%)
6.5
Number of peaks
245 (qval < 1E-05)

Base call quality data from DBCLS SRA