Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

source_name
heart, mdx
age
7 months
antibody
None
genotype/variation
IKK[beta]f/f

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated soluble chromatin was immunoprecipitated with 15 mg of H3K27ac antibody and pulled down by protein G sepharose beads equillibriated with yeast tRNA and BSA. Purified DNA (10 ng) was end-repaired and A-nucleotide overhangs were added by incubation with the Taq Klenow fragment lacking exonuclease activity. After the attachment of anchor sequences, fragments were PCR-amplified using Illumina-supplied primers. The purified DNA library products were evaluated using Bioanalyzer (Agilent).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
32721177
Reads aligned (%)
88.9
Duplicates removed (%)
5.6
Number of peaks
269 (qval < 1E-05)

mm9

Number of total reads
32721177
Reads aligned (%)
88.8
Duplicates removed (%)
6.0
Number of peaks
262 (qval < 1E-05)

Base call quality data from DBCLS SRA