Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Adult head
NA
NA

Attributes by original data submitter

Sample

source_name
Control, Input
age
10 days old
genotype/variation
elav-GAL4/Y
Sex
male
tissue
whole heads
chip antibody
none
chip antibody vendor
Abcam
molecule subtype
input genomice DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
2 grams of fly heads were ground in liquid nitrogen and DNA was crosslinked to protein with formaldehyde. Chromatin was sheared to 500 bp prior to ChIP Libraries were prepared using the NEBNext ChIP-seq Library Prep Reagent Set for Illumina according to the manufacturer's recommendations

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
7326969
Reads aligned (%)
91.7
Duplicates removed (%)
21.4
Number of peaks
7251 (qval < 1E-05)

dm3

Number of total reads
7326969
Reads aligned (%)
93.2
Duplicates removed (%)
17.0
Number of peaks
3592 (qval < 1E-05)

Base call quality data from DBCLS SRA