SRX4017945
GSM3123488: WT mESC input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 mESC
cell type
E14 mESC
status
Undifferentiated
genotype
WT
antibody
NA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone-DNA and TF-DNA complexes were isolated with antibody Illumina TrueSeq ChIP Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7136377
Reads aligned (%)
94.5
Duplicates removed (%)
8.2
Number of peaks
105 (qval < 1E-05)

mm9

Number of total reads
7136377
Reads aligned (%)
94.3
Duplicates removed (%)
8.2
Number of peaks
116 (qval < 1E-05)

Base call quality data from DBCLS SRA